I was wondering if there were kind of automated solutions or practices for those who havent dig into the internals like me (much like how LOOT worked, Skyrim mod community has always amazed me in such ways).
Youll probably still be stuck fixing problems in the console during your game though. This becomes even worse when realizing that some of the patches are provided only within FOMOD installers, not even mentioned on the mod pages at all. When installing an additional mod X, it is quite easy to overlook a patch between X and any of existing mods, unless it is provided on Xs mod page. If I target a perfectly pre-arranged mod list (such as STEP ) and install them one-by-one from the beginning, it is possible to grab all of those patches by carefully navigating each of mod pages.
To handle those side effects, lots of them are providing compatibility patches for other common mods. Mod Organizer Fix Conflicts How To Make Your Mod Organizer How To Fix Conflicts By haphararun1986 Follow | Public